IL_7OLC_149

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCGU*AAU

Length

8 nucleotides

Bulged bases

7OLC|1|2|C|113, 7OLC|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_149 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2123

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7OLC|1|2|A|111
7OLC|1|2|U|112
7OLC|1|2|C|113
7OLC|1|2|G|114
7OLC|1|2|U|115
*
7OLC|1|2|A|297
7OLC|1|2|A|298
7OLC|1|2|U|299

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11-like protein