IL_7OLC_150

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_150 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1703

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7OLC|1|2|U|116
7OLC|1|2|U|117
7OLC|1|2|A|118
7OLC|1|2|U|119
7OLC|1|2|U|120
7OLC|1|2|U|121
*
7OLC|1|2|A|292
7OLC|1|2|U|293
7OLC|1|2|U|294
7OLC|1|2|C|295
7OLC|1|2|A|296

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8