IL_7OLC_181

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_181 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1017

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7OLC|1|2|A|863
7OLC|1|2|G|864
*
7OLC|1|2|C|960
7OLC|1|2|A|961
7OLC|1|2|U|962
7OLC|1|2|U|963

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13-like protein

Chain SW

40S ribosomal protein S22-like protein

Chain Sb

Ribosomal protein s27-like protein