IL_7OLC_186

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7OLC|1|2|G|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_186 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1511

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7OLC|1|2|U|891
7OLC|1|2|U|892
7OLC|1|2|G|893
7OLC|1|2|U|894
7OLC|1|2|C|895
7OLC|1|2|A|896
7OLC|1|2|G|897
*
7OLC|1|2|C|908
7OLC|1|2|U|909
7OLC|1|2|U|910
7OLC|1|2|G|911
7OLC|1|2|G|912
7OLC|1|2|A|913
7OLC|1|2|U|914
7OLC|1|2|U|915
7OLC|1|2|U|916
7OLC|1|2|A|917

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1

Chain SO

40S ribosomal protein S14-like protein