IL_7OLC_194

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

7OLC|1|2|G|1147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_194 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.289

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7OLC|1|2|G|1146
7OLC|1|2|G|1147
7OLC|1|2|A|1148
*
7OLC|1|2|U|1623
7OLC|1|2|U|1624

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain Sa

40S ribosomal protein S26