IL_7OLC_196

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_196 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1829

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OLC|1|2|C|1170
7OLC|1|2|C|1171
7OLC|1|2|U|1172
*
7OLC|1|2|G|1460
7OLC|1|2|C|1461
7OLC|1|2|G|1462

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein

Chain SU

40S ribosomal protein S20-like protein