IL_7OLC_217

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7OLC|1|2|A|1752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_217 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3171

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7OLC|1|2|C|1640
7OLC|1|2|G|1641
7OLC|1|2|C|1642
7OLC|1|2|U|1643
*
7OLC|1|2|A|1749
7OLC|1|2|A|1750
7OLC|1|2|A|1751
7OLC|1|2|A|1752
7OLC|1|2|G|1753

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein s23-like protein