IL_7OLC_221

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_221 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1652

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OLC|1|2|U|1661
7OLC|1|2|C|1662
7OLC|1|2|A|1663
*
7OLC|1|2|U|1730
7OLC|1|2|C|1731
7OLC|1|2|G|1732

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein l23-like protein

Chain SI

40S ribosomal protein S8