IL_7OLC_243

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GAUU

Length

7 nucleotides

Bulged bases

7OLC|1|1|U|758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_243 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2522

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7OLC|1|1|A|737
7OLC|1|1|U|738
7OLC|1|1|C|739
*
7OLC|1|1|G|756
7OLC|1|1|A|757
7OLC|1|1|U|758
7OLC|1|1|U|759

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L44-like protein