IL_7OLC_263

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGGC*GUGUUGACG

Length

16 nucleotides

Bulged bases

7OLC|1|1|U|2122, 7OLC|1|1|U|2138, 7OLC|1|1|C|2142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_263 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.3962

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7OLC|1|1|C|2119
7OLC|1|1|G|2120
7OLC|1|1|A|2121
7OLC|1|1|U|2122
7OLC|1|1|G|2123
7OLC|1|1|G|2124
7OLC|1|1|C|2125
*
7OLC|1|1|G|2135
7OLC|1|1|U|2136
7OLC|1|1|G|2137
7OLC|1|1|U|2138
7OLC|1|1|U|2139
7OLC|1|1|G|2140
7OLC|1|1|A|2141
7OLC|1|1|C|2142
7OLC|1|1|G|2143

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-like protein

Chain Lp

60S ribosomal protein L43-like protein