IL_7OLC_265

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUU*ACA

Length

7 nucleotides

Bulged bases

7OLC|1|1|U|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_265 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.1844

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7OLC|1|1|U|2371
7OLC|1|1|G|2372
7OLC|1|1|U|2373
7OLC|1|1|U|2374
*
7OLC|1|1|A|2770
7OLC|1|1|C|2771
7OLC|1|1|A|2772

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain La

60S ribosomal protein L28-like protein

Chain Lb

60S ribosomal protein L29