IL_7OLC_274

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CAGAACG

Length

12 nucleotides

Bulged bases

7OLC|1|1|A|3100, 7OLC|1|1|C|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_274 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3012

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OLC|1|1|C|2962
7OLC|1|1|A|2963
7OLC|1|1|A|2964
7OLC|1|1|U|2965
7OLC|1|1|G|2966
*
7OLC|1|1|C|3096
7OLC|1|1|A|3097
7OLC|1|1|G|3098
7OLC|1|1|A|3099
7OLC|1|1|A|3100
7OLC|1|1|C|3101
7OLC|1|1|G|3102

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein