IL_7OLC_275

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*CAGUG

Length

8 nucleotides

Bulged bases

7OLC|1|1|G|3036, 7OLC|1|1|U|3037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_275 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2824

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OLC|1|1|U|3021
7OLC|1|1|U|3022
7OLC|1|1|G|3023
*
7OLC|1|1|C|3034
7OLC|1|1|A|3035
7OLC|1|1|G|3036
7OLC|1|1|U|3037
7OLC|1|1|G|3038

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein