IL_7OLC_297

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_297 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.3363

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OLC|1|2|C|1491
7OLC|1|2|U|1492
7OLC|1|2|U|1493
7OLC|1|2|G|1494
*
7OLC|1|2|C|1505
7OLC|1|2|C|1506
7OLC|1|2|G|1507
7OLC|1|2|G|1508

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S19-like protein