IL_7OLC_298

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_298 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1429

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7OLC|1|2|G|1536
7OLC|1|2|G|1537
7OLC|1|2|G|1538
7OLC|1|2|A|1539
7OLC|1|2|U|1540
7OLC|1|2|A|1541
7OLC|1|2|G|1542
*
7OLC|1|2|C|1561
7OLC|1|2|U|1562
7OLC|1|2|U|1563
7OLC|1|2|C|1564
7OLC|1|2|A|1565
7OLC|1|2|A|1566
7OLC|1|2|C|1567

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein