IL_7OLC_313

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7OLC|1|2|A|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_313 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1628

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7OLC|1|2|G|613
7OLC|1|2|U|614
7OLC|1|2|U|615
7OLC|1|2|A|616
7OLC|1|2|A|617
7OLC|1|2|A|618
7OLC|1|2|A|619
*
7OLC|1|2|U|1101
7OLC|1|2|C|1102

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein s23-like protein

Chain Sa

40S ribosomal protein S26