IL_7OLD_003

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_003 not in the Motif Atlas

Homologous match to IL_8C3A_004

Geometric discrepancy: 0.1191

The information below is about IL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7OLD|1|1|C|28
7OLD|1|1|C|29
*
7OLD|1|1|G|57
7OLD|1|1|A|58
7OLD|1|1|G|59

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

Ribosomal protein L15

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Lj

Ribosomal protein L37