IL_7OLD_004
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 7OLD|1|1|A|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_004 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.1228
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|1|C|32
7OLD|1|1|U|33
7OLD|1|1|G|34
7OLD|1|1|A|35
7OLD|1|1|A|36
7OLD|1|1|C|37
7OLD|1|1|U|38
7OLD|1|1|U|39
*
7OLD|1|1|A|46
7OLD|1|1|U|47
7OLD|1|1|C|48
7OLD|1|1|A|49
7OLD|1|1|A|50
7OLD|1|1|U|51
7OLD|1|1|A|52
7OLD|1|1|A|53
7OLD|1|1|G|54
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein L44-like protein
Coloring options: