IL_7OLD_016
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAC*GGGUUAAAUAGCAC
- Length
- 18 nucleotides
- Bulged bases
- 7OLD|1|1|U|391, 7OLD|1|1|A|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_016 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1383
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7OLD|1|1|G|369
7OLD|1|1|C|370
7OLD|1|1|A|371
7OLD|1|1|C|372
*
7OLD|1|1|G|383
7OLD|1|1|G|384
7OLD|1|1|G|385
7OLD|1|1|U|386
7OLD|1|1|U|387
7OLD|1|1|A|388
7OLD|1|1|A|389
7OLD|1|1|A|390
7OLD|1|1|U|391
7OLD|1|1|A|392
7OLD|1|1|G|393
7OLD|1|1|C|394
7OLD|1|1|A|395
7OLD|1|1|C|396
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- Ribosomal protein eL39
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