IL_7OLD_022
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAUAAAGGC*GUGUAAUAC
- Length
- 19 nucleotides
- Bulged bases
- 7OLD|1|1|A|510, 7OLD|1|1|U|511, 7OLD|1|1|U|560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_022 not in the Motif Atlas
- Homologous match to IL_8C3A_021
- Geometric discrepancy: 0.3374
- The information below is about IL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18200.1
- Basepair signature
- cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OLD|1|1|G|508
7OLD|1|1|G|509
7OLD|1|1|A|510
7OLD|1|1|U|511
7OLD|1|1|A|512
7OLD|1|1|A|513
7OLD|1|1|A|514
7OLD|1|1|G|515
7OLD|1|1|G|516
7OLD|1|1|C|517
*
7OLD|1|1|G|557
7OLD|1|1|U|558
7OLD|1|1|G|559
7OLD|1|1|U|560
7OLD|1|1|A|561
7OLD|1|1|A|562
7OLD|1|1|U|563
7OLD|1|1|A|564
7OLD|1|1|C|565
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LS
- 60S ribosomal protein L20
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