IL_7OLD_029

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_029 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.1349

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|C|740
7OLD|1|1|U|741
7OLD|1|1|G|742
7OLD|1|1|A|743
7OLD|1|1|U|744
7OLD|1|1|G|745
*
7OLD|1|1|C|750
7OLD|1|1|G|751
7OLD|1|1|G|752
7OLD|1|1|A|753
7OLD|1|1|U|754
7OLD|1|1|G|755

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein

Chain Lo

60S ribosomal protein L44-like protein