IL_7OLD_048

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

7OLD|1|1|A|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_048 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.3641

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7OLD|1|1|C|1004
7OLD|1|1|G|1005
*
7OLD|1|1|U|1011
7OLD|1|1|A|1012
7OLD|1|1|G|1013

Current chains

Chain 1

26S rRNA

Nearby chains