IL_7OLD_060

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CUC

Length

8 nucleotides

Bulged bases

7OLD|1|1|A|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_060 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2279

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OLD|1|1|G|1245
7OLD|1|1|A|1246
7OLD|1|1|C|1247
7OLD|1|1|U|1248
7OLD|1|1|G|1249
*
7OLD|1|1|C|1258
7OLD|1|1|U|1259
7OLD|1|1|C|1260

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein

Chain Ls

60S acidic ribosomal protein P0