IL_7OLD_062

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

7OLD|1|1|A|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_062 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.1792

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OLD|1|1|C|1368
7OLD|1|1|A|1369
7OLD|1|1|G|1370
*
7OLD|1|1|C|1403
7OLD|1|1|G|1404

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Lq

Putative 60S ribosomal protein