IL_7OLD_075

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_075 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.1185

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OLD|1|1|G|1641
7OLD|1|1|G|1642
7OLD|1|1|C|1643
*
7OLD|1|1|G|1766
7OLD|1|1|A|1767
7OLD|1|1|C|1768

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein

Chain Lp

60S ribosomal protein L43-like protein