IL_7OLD_112

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_112 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.2478

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7OLD|1|1|G|2729
7OLD|1|1|U|2730
7OLD|1|1|C|2731
7OLD|1|1|C|2732
*
7OLD|1|1|G|2746
7OLD|1|1|C|2747

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

Ribosomal protein L18-like protein

Chain La

60S ribosomal protein L28-like protein

Chain Lo

60S ribosomal protein L44-like protein