IL_7OLD_117

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_117 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1431

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OLD|1|1|C|2794
7OLD|1|1|C|2795
7OLD|1|1|A|2796
7OLD|1|1|A|2797
7OLD|1|1|G|2798
*
7OLD|1|1|C|2808
7OLD|1|1|G|2809
7OLD|1|1|A|2810
7OLD|1|1|C|2811
7OLD|1|1|G|2812

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain Lm

Ubiquitin