IL_7OLD_122

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7OLD|1|1|A|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_122 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1621

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7OLD|1|1|U|2850
7OLD|1|1|A|2851
*
7OLD|1|1|U|2868
7OLD|1|1|A|2869
7OLD|1|1|A|2870
7OLD|1|1|G|2871

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain Lm

Ubiquitin