IL_7OLD_130

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

7OLD|1|1|G|3036, 7OLD|1|1|U|3037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_130 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.263

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OLD|1|1|U|3021
7OLD|1|1|U|3022
*
7OLD|1|1|A|3035
7OLD|1|1|G|3036
7OLD|1|1|U|3037
7OLD|1|1|G|3038

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein