IL_7OLD_140

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UCCU

Length

6 nucleotides

Bulged bases

7OLD|1|1|C|3323, 7OLD|1|1|C|3324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_140 not in the Motif Atlas

Homologous match to IL_5TBW_131

Geometric discrepancy: 0.4497

The information below is about IL_5TBW_131

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OLD|1|1|A|3265
7OLD|1|1|A|3266
*
7OLD|1|1|U|3322
7OLD|1|1|C|3323
7OLD|1|1|C|3324
7OLD|1|1|U|3325

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain Ld

Putative 60S ribosomal protein