IL_7OLD_169

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7OLD|1|2|U|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_169 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.1628

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OLD|1|2|U|436
7OLD|1|2|U|437
7OLD|1|2|A|438
*
7OLD|1|2|U|460
7OLD|1|2|A|461

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Elongation factor 2

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24