IL_7OLD_175

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

7OLD|1|2|U|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|A|547
7OLD|1|2|G|548
7OLD|1|2|G|549
7OLD|1|2|G|550
7OLD|1|2|C|551
7OLD|1|2|A|552
7OLD|1|2|A|553
7OLD|1|2|G|554
7OLD|1|2|U|555
7OLD|1|2|C|556
*
7OLD|1|2|G|583
7OLD|1|2|C|584
7OLD|1|2|U|585

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain SC

40S ribosomal protein S2-like protein

Chain SD

40S ribosomal protein S3-like protein

Chain SJ

40S ribosomal protein s9-like protein

Chain Se

40S ribosomal protein S30