IL_7OLD_187

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7OLD|1|2|U|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_187 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.323

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7OLD|1|2|G|817
7OLD|1|2|U|818
7OLD|1|2|G|819
*
7OLD|1|2|C|849
7OLD|1|2|C|850

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain SH

40S ribosomal protein S7