IL_7OLD_189

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7OLD|1|2|U|957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_189 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1633

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7OLD|1|2|G|865
7OLD|1|2|G|866
7OLD|1|2|A|867
7OLD|1|2|C|868
*
7OLD|1|2|G|955
7OLD|1|2|U|956
7OLD|1|2|U|957
7OLD|1|2|U|958
7OLD|1|2|U|959

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13-like protein

Chain Sb

Ribosomal protein s27-like protein