IL_7OLD_193

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7OLD|1|2|G|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_193 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1951

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7OLD|1|2|U|891
7OLD|1|2|U|892
7OLD|1|2|G|893
7OLD|1|2|U|894
7OLD|1|2|C|895
7OLD|1|2|A|896
7OLD|1|2|G|897
*
7OLD|1|2|C|908
7OLD|1|2|U|909
7OLD|1|2|U|910
7OLD|1|2|G|911
7OLD|1|2|G|912
7OLD|1|2|A|913
7OLD|1|2|U|914
7OLD|1|2|U|915
7OLD|1|2|U|916
7OLD|1|2|A|917

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1

Chain SO

40S ribosomal protein S14-like protein