IL_7OLD_200

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7OLD|1|2|A|1627

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_200 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1536

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OLD|1|2|G|1143
7OLD|1|2|A|1144
*
7OLD|1|2|U|1626
7OLD|1|2|A|1627
7OLD|1|2|C|1628

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2-like protein

Chain Sa

40S ribosomal protein S26