IL_7OLD_219

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACUCC*GUAAUC

Length

13 nucleotides

Bulged bases

7OLD|1|2|A|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_219 not in the Motif Atlas

Homologous match to IL_4V88_460

Geometric discrepancy: 0.3263

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|G|1484
7OLD|1|2|U|1485
7OLD|1|2|A|1486
7OLD|1|2|C|1487
7OLD|1|2|U|1488
7OLD|1|2|C|1489
7OLD|1|2|C|1490
*
7OLD|1|2|G|1509
7OLD|1|2|U|1510
7OLD|1|2|A|1511
7OLD|1|2|A|1512
7OLD|1|2|U|1513
7OLD|1|2|C|1514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3-like protein

Chain SU

40S ribosomal protein S20-like protein

Chain Sd

Ribosomal protein uS14