IL_7OLD_221

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_221 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1523

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OLD|1|2|G|1536
7OLD|1|2|G|1537
7OLD|1|2|G|1538
7OLD|1|2|A|1539
7OLD|1|2|U|1540
7OLD|1|2|A|1541
*
7OLD|1|2|U|1562
7OLD|1|2|U|1563
7OLD|1|2|C|1564
7OLD|1|2|A|1565
7OLD|1|2|A|1566
7OLD|1|2|C|1567

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein