IL_7OLD_244

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_244 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2674

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7OLD|1|5|U|27
7OLD|1|5|C|28
*
7OLD|1|5|G|42
7OLD|1|5|G|43
7OLD|1|5|A|44

Current chains

Chain 5

pe/E tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

HABP4_PAI-RBP1 domain-containing protein