IL_7OLD_245

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_245 not in the Motif Atlas

Geometric match to IL_8C3A_092

Geometric discrepancy: 0.3936

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7OLD|1|1|G|154
7OLD|1|1|A|155
7OLD|1|1|G|156
*
7OLD|1|1|C|253
7OLD|1|1|U|254
7OLD|1|1|U|255
7OLD|1|1|C|256

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36