IL_7OLD_250

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUU*AAU

Length

7 nucleotides

Bulged bases

7OLD|1|1|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_250 not in the Motif Atlas

Geometric match to IL_4P3U_001

Geometric discrepancy: 0.2651

The information below is about IL_4P3U_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OLD|1|1|A|965
7OLD|1|1|G|966
7OLD|1|1|U|967
7OLD|1|1|U|968
*
7OLD|1|1|A|1081
7OLD|1|1|A|1082
7OLD|1|1|U|1083

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29