IL_7OLD_270

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_270 not in the Motif Atlas

Homologous match to IL_8P9A_238

Geometric discrepancy: 0.2945

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7OLD|1|1|A|158
7OLD|1|1|U|159
7OLD|1|1|G|160
*
7OLD|1|1|C|250
7OLD|1|1|U|251

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase