IL_7OPE_008
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAGUAG*CGAAACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OPE_008 not in the Motif Atlas
- Homologous match to IL_4WF9_009
- Geometric discrepancy: 0.093
- The information below is about IL_4WF9_009
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
7OPE|1|A|C|241
7OPE|1|A|U|242
7OPE|1|A|G|243
7OPE|1|A|A|244
7OPE|1|A|G|245
7OPE|1|A|U|246
7OPE|1|A|A|247
7OPE|1|A|G|248
*
7OPE|1|A|C|256
7OPE|1|A|G|257
7OPE|1|A|A|258
7OPE|1|A|A|259
7OPE|1|A|A|260
7OPE|1|A|C|261
7OPE|1|A|G|262
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L15
- Chain i
- 50S ribosomal protein L35
Coloring options: