IL_7OPE_033

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

7OPE|1|A|A|943

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_033 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3479

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

7OPE|1|A|G|927
7OPE|1|A|G|928
7OPE|1|A|G|929
7OPE|1|A|C|930
*
7OPE|1|A|G|940
7OPE|1|A|U|941
7OPE|1|A|U|942
7OPE|1|A|A|943
7OPE|1|A|C|944

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH