IL_7OPE_052

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_052 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.1012

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|C|1390
7OPE|1|A|U|1391
7OPE|1|A|A|1392
7OPE|1|A|A|1393
7OPE|1|A|G|1394
*
7OPE|1|A|C|1415
7OPE|1|A|G|1416
7OPE|1|A|A|1417
7OPE|1|A|U|1418
7OPE|1|A|G|1419

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain h

50S ribosomal protein L34