IL_7OPE_069

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7OPE|1|A|G|1744

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_069 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1034

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|C|1731
7OPE|1|A|G|1732
7OPE|1|A|U|1733
7OPE|1|A|A|1734
7OPE|1|A|A|1735
7OPE|1|A|C|1736
*
7OPE|1|A|G|1741
7OPE|1|A|G|1742
7OPE|1|A|A|1743
7OPE|1|A|G|1744
7OPE|1|A|A|1745
7OPE|1|A|A|1746
7OPE|1|A|G|1747

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2