IL_7OPE_070

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

7OPE|1|A|U|1758

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_070 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2664

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OPE|1|A|U|1756
7OPE|1|A|G|1757
7OPE|1|A|U|1758
7OPE|1|A|U|1759
7OPE|1|A|A|1760
7OPE|1|A|G|1761
*
7OPE|1|A|C|1772
7OPE|1|A|G|1773
7OPE|1|A|A|1774
7OPE|1|A|G|1775
7OPE|1|A|A|1776

Current chains

Chain A

23S rRNA

Nearby chains