IL_7OPE_075

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_075 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.3159

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

7OPE|1|A|G|1875
7OPE|1|A|A|1876
7OPE|1|A|A|1877
7OPE|1|A|G|1878
*
7OPE|1|A|C|1922
7OPE|1|A|C|1923

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Uncharacterized protein YabO

Chain E

50S ribosomal protein L2