IL_7OPE_104

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AUCG

Length

6 nucleotides

Bulged bases

7OPE|1|A|U|2741, 7OPE|1|A|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_104 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1256

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7OPE|1|A|U|2724
7OPE|1|A|U|2725
*
7OPE|1|A|A|2740
7OPE|1|A|U|2741
7OPE|1|A|C|2742
7OPE|1|A|G|2743

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain T

50S ribosomal protein L19