IL_7OPE_113
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OPE_113 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1378
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OPE|1|B|C|69
7OPE|1|B|G|70
7OPE|1|B|A|71
7OPE|1|B|U|72
7OPE|1|B|G|73
7OPE|1|B|G|74
7OPE|1|B|U|75
7OPE|1|B|A|76
7OPE|1|B|G|77
*
7OPE|1|B|U|95
7OPE|1|B|G|96
7OPE|1|B|A|97
7OPE|1|B|G|98
7OPE|1|B|A|99
7OPE|1|B|G|100
7OPE|1|B|U|101
7OPE|1|B|A|102
7OPE|1|B|G|103
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L27
- Chain d
- 50S ribosomal protein L30
Coloring options: